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DTSTAMP:20230124T171521Z
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DTSTART;TZID=America/Chicago:20221114T134500
DTEND;TZID=America/Chicago:20221114T141000
UID:submissions.supercomputing.org_SC22_sess464_ws_hust103@linklings.com
SUMMARY:Containerized Bioinformatics Ecosystem for HPC
DESCRIPTION:Workshop\n\nContainerized Bioinformatics Ecosystem for HPC\n\n
 Zhang, Gorenstein, Bhutra, DeRue\n\nIn High-performance computing (HPC) en
 vironments, SingularityCE has been widely used, and the primary reason for
  its popularity is that it can significantly reduce system administrators’
  work of deploying applications. Traditionally, HPC administrators may nee
 d thousands of hours to deploy a broad stack of bioinformatics application
 s. SingularityCE has the potential to transform traditional methods of ins
 talling and managing applications. We introduce how our HPC center used Si
 ngularityCE to deploy about 600 containerized bioinformatics applications,
  which were tested by staff with expertise in bioinformatics , onto 7 prod
 uction systems. This presentation also explores how, leveraging LMOD, cont
 ainerization was made transparent to users through environment modules for
  these container images. Finally, it discusses how we deployed application
 s with graphical user interface to Open OnDemand as interactive applicatio
 ns, and how we modified python-based containers to support Jupyter Noteboo
 k. The sum of these contributions provides a robust and reproducible compu
 ting ecosystem for life science researchers.\n\nSession Format: Recorded\n
 \nRegistration Category: Workshop Reg Pass
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